{ "_id": "6a103057acfb0bcc41c9561b", "Package": "CSESA", "Type": "Package", "Title": "CRISPR-Based Salmonella Enterica Serotype Analyzer", "Version": "1.2.0", "Authors@R": "c(\nperson(\"Xia\", \"Zhang\", role = c(\"aut\", \"cre\"), email = \"zhangxia9403@gmail.com\"),\nperson(\"Lang\", \"Yang\", role = \"aut\", email = \"ylang1992@126.com\"))", "Description": "Salmonella enterica is a major cause of bacterial\nfood-borne disease worldwide. Serotype identification is the\nmost commonly used typing method to characterize Salmonella\nisolates. However, experimental serotyping needs great cost on\nmanpower and resources. Recently, we found that the newly\nincorporated spacer in the clustered regularly interspaced\nshort palindromic repeat (CRISPR) could serve as an effective\nmarker for typing of Salmonella. It was further revealed by Li\net. al (2014) that recognized types\nbased on the combination of two newly incorporated spacer in\nboth CRISPR loci showed high accordance with serotypes. Here,\nwe developed an R package 'CSESA' to predict the serotype based\non this finding. Considering it’s time saving and of high\naccuracy, we recommend to predict the serotypes of unknown\nSalmonella isolates using 'CSESA' before doing the traditional\nserotyping.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "RoxygenNote": "6.0.1", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://xia-zhang.r-universe.dev", "Date/Publication": "2019-03-02 12:12:00 UTC", "RemoteUrl": "https://github.com/xia-zhang/csesa", "RemoteRef": "HEAD", "RemoteSha": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-12 09:34:48 UTC", "User": "root" }, "Author": "Xia Zhang [aut, cre],\nLang Yang [aut]", "Maintainer": "Xia Zhang ", "MD5sum": "4dc3d5e1b7829db1f1e40bc1b4df5bf4", "_user": "xia-zhang", "_type": "src", "_file": "CSESA_1.2.0.tar.gz", "_fileid": "d3deae91bdde489e1031efda533024597bb93afd9588bf9768733d5f6a359b9d", "_filesize": 968138, "_sha256": "d3deae91bdde489e1031efda533024597bb93afd9588bf9768733d5f6a359b9d", "_created": "2026-05-12T09:34:48.000Z", "_published": "2026-05-22T10:30:47.018Z", "_distro": "noble", "_jobs": [ { "job": 77362128199, "time": 133, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "6940661690" }, { "job": 77362127981, "time": 138, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "6940665292" }, { "job": 77362128128, "time": 196, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "6940742738" }, { "job": 77362128095, "time": 172, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "6940737720" }, { "job": 77362127377, "time": 165, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6940614793" }, { "job": 77362127321, "time": 89, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7158386897" }, { "job": 77362127584, "time": 147, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "6940666456" }, { "job": 77362128077, "time": 222, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "6940693016" }, { "job": 77362127856, "time": 99, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "6940650644" } ], "_buildurl": "https://github.com/r-universe/xia-zhang/actions/runs/25725929642", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/xia-zhang/csesa", "_commit": { "id": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "author": "Xia Zhang ", "committer": "Xia Zhang ", "message": "Update README\n", "time": 1551528720 }, "_maintainer": { "name": "Xia Zhang", "email": "zhangxia9403@gmail.com", "login": "xia-zhang", "uuid": 16008430 }, "_registered": true, "_dependencies": [ { "package": "Biostrings", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "xia-zhang", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "xia-zhang", "count": 57, "uuid": 16008430 } ], "_userbio": { "uuid": 16008430, "type": "user", "name": "Xia Zhang" }, "_downloads": { "count": 191, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CSESA" }, "_mentions": 2, "_devurl": "https://github.com/xia-zhang/csesa", "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/CSESA.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/xia-zhang/csesa", "_realowner": "xia-zhang", "_cranurl": true, "_releases": [ { "version": "1.0.4", "date": "2018-06-15" }, { "version": "1.1.0", "date": "2018-09-24" }, { "version": "1.1.1", "date": "2018-09-29" }, { "version": "1.2.0", "date": "2019-03-04" } ], "_exports": [ "CSESA", "GetNewSpacer" ], "_help": [], "_readme": "https://github.com/xia-zhang/csesa/raw/HEAD/README.md", "_rundeps": [ "BiocGenerics", "Biostrings", "crayon", "generics", "IRanges", "S4Vectors", "Seqinfo", "XVector" ], "_score": 3, "_indexed": true, "_nocasepkg": "csesa", "_universes": [ "xia-zhang" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.0", "date": "2026-05-12T09:36:49.000Z", "distro": "noble", "commit": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "fileid": "d7d37c2a8f059da37cfe37d3109e7878614c815577da9e4621bf27e63908b2cf", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/xia-zhang/actions/runs/25725929642" }, { "r": "4.6.0", "os": "linux", "version": "1.2.0", "date": "2026-05-12T09:37:00.000Z", "distro": "noble", "commit": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "fileid": "08b989f9a4e37688431f1f394abcde765375b2c268e3bf07e90b80b94a49a160", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/xia-zhang/actions/runs/25725929642" }, { "r": "4.5.3", "os": "mac", "version": "1.2.0", "date": "2026-05-12T09:40:42.000Z", "commit": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "fileid": "656ba988aaf07b7462693309eb36e6e471b10f991c23de003fe0e6af60f8eb07", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/xia-zhang/actions/runs/25725929642" }, { "r": "4.6.0", "os": "mac", "version": "1.2.0", "date": "2026-05-12T09:40:21.000Z", "commit": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "fileid": "69d425fa173036a59f250af198240b00362edcf1ce1bbd1000878c802d08ed05", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/xia-zhang/actions/runs/25725929642" }, { "r": "4.7.0", "os": "win", "version": "1.2.0", "date": "2026-05-12T09:36:59.000Z", "commit": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "fileid": "8eca0860cd2526f21ecb0235a8e0f12051e8e3b8918c6090f2aa5b6579c04ecf", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/xia-zhang/actions/runs/25725929642" }, { "r": "4.5.3", "os": "win", "version": "1.2.0", "date": "2026-05-12T09:38:09.000Z", "commit": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "fileid": "df5128c2461a0ea116a6c1894759c6e2d7340c23782e0e83c8fc8b03aea3cfa4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/xia-zhang/actions/runs/25725929642" }, { "r": "4.6.0", "os": "win", "version": "1.2.0", "date": "2026-05-12T09:36:11.000Z", "commit": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "fileid": "d5d3ce3e6066731108ab681736eddedcedda5732e1b9226559986e1ce4cd715e", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/xia-zhang/actions/runs/25725929642" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.0", "date": "2026-05-22T10:30:29.000Z", "commit": "47a91946a198d42e1dc895ae7134c61e3cdd8a6d", "fileid": "2706be7faf6d71b87ec8ef7b637f9ec01133ed959d7bf0a624901fae94e51bc9", "status": "success", "buildurl": "https://github.com/r-universe/xia-zhang/actions/runs/25725929642" } ] }