CLSPT

Clustered regularly interspaced short palindromic repeats locus spacer pair typing method for salmonella

Installation

Install from CRAN

install.packages("CSESA")

Install from github

library("devtools")
# install_github("Xia-Zhang/CSESA")
install.packages("CSESA", repos = c('https://xia-zhang.r-universe.dev', 'https://cloud.r-project.org'))
library("CSESA")
CSESA("E:/code/CSESA/testdata/1.fasta", "E:/code/CSESA/testdata/2.fasta")